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Party in the Rhizosphere
… are the VIPs. They’re feasting on the compounds that plants secrete through their roots, creating a lively zone …
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Viruses Reprogram Cells into Different Virocells
… diversity with an aim to improve predictive ecosystems models, University of Michigan’s Melissa Duhaime and The … the study’s lead author is Cristina Howard-Varona, a postdoctoral researcher in Sullivan’s lab. Their research was … science initiative between the  U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Computationally Classifying Fungal Lifestyles
… were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, … a computer how to classify 101 representative genomes of Dothideomycetes, the largest class of fungi, by lifestyles. … 55 newly-sequenced species.  The Impact The class  Dothideomycetes includes fungi that obtain nutrients from …
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Metabolomics
… products At JGI, in-depth molecular profiles are generated for metabolites extracted from a variety of … more details on the instrumentation we use and our methodology for metabolite analyses.  … Read more about our …
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Representing sex chromosomes in genome assemblies
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Simon Roux
… interactions in microbial systems. Through a 2021 DOE Early Career Research Program, Dr. Roux established and … Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France … through global metagenomics. Nature 578, 432–436. … DOE BER Early Career Research Program, 2021 Thomson Reuters …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone Health) and … way. Eventually, the goal is to create an entirely human-generated yeast genome. …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Cone Snail  Californiconus californicus (and cone snails in general) outside of mostly anecdotal information,” Ul-Hasan noted. “I spent a good portion … is on cone snails, C. californicus in particular, as a model system for venom-microbe interactions. Cone snail …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux … in natural ecosystems, and functionally explore viral genetic diversity.  In 2021, he was among those selected by … Virus-Driven Alterations of Microbial Metabolism in Model Soil Ecosystems,” uses a combination of experimental …
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Enhancing microRNA167A expression in seed decreases the α‐linolenic acid content and increases seed size in Camelina sativa
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JGI@25: Solving the Mystery of the Missing Oil
… biologist and current holder of the University of Tennessee-Oak Ridge National Laboratory Governor’s Chair, noted … of Energy & Environment Meeting: “What we wanted to do was apply a systems biology approach to the oil spill, … at exactly what happens at all levels and developing models for cellular properties, communities and ecosystems.” …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and biogeochemical … of nutrients in these systems.” -Mike Wilkins, Colorado State University GI users and microbiome researchers Mike … Wilkins and his graduate student Kaela Amundson at Colorado State University have many questions about the microbial …
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