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Better Genome Editing for Bioenergy
… sgRNA sequences: six for every gene in the genome. The JGI  DNA Synthesis Science team synthesized these sgRNAs, cloning … in a  Y. lipolytica strain lacking a necessary enzyme for DNA repair. Whereas an effective sgRNA would lead Cas9 to make a lethal double-strand DNA break, a dysfunctional sgRNA would be harmless. The team …
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SPRUCE-ing Up Science
… a combination of biology and computer science, to reveal clues about how microbial and bacteria communities … work on this project was only the beginning of this much longer-term body of work, the experience helped to solidify …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… a plant. The Science Sex in plants can be befuddling. Most species are hermaphrodites, expressing both male and female … i.e., XY instead of XX. But, like some plant and songbird species, the system in shrub willow is flipped: females are … … This work was supported by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to LBS, …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
As mobile genetic elements like viruses spread their DNA, they can affect how microbes cycle nutrients and adapt …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… certain diseases are well known to be partially due to the DNA sequence that makes up an individual’s genome. The genes …
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Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale
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Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 1
But to see what they’re doing, he first needs their DNA.   …
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You Can Move, But You Can’t Hide
… to become an essential tool for researching global viral diversity. geNomad has already been downloaded thousands of …
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Igor Grigoriev
… et al (2022) Wildfire-dependent changes in soil microbiome diversity and function.  Nature Microbiol. 7(9):1419-1430. … et al (2019) Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in … Haitjema et al (2017) A parts list for fungal cellulosomes revealed by comparative genomics.  Nature Microbio 2:17087. …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… the genomes of two varieties of a close relative and model species. The following year saw the beginnings of common … decades of research, switchgrass has become an important species whose complex genomes are helping breeders …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic …
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