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JGI@25: Using Team Science to Build Communities Around Data
… these initial efforts: Spatafora and Jason Stajich from UC Riverside would focus on broad sampling of early … 100 genomes in progress and 200 that are pending samples from users. Roughly 300 have been published. Spatafora said … of 1 billion years of evolution in Kingdom Fungi — from phylogenetic relationships to evolution of genomic …
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How Maize Makes An Antibiotic Cocktail
… ability make zealexins, and harnessed gene expression data from these lines to identify genes associated with zealexin … Research was supported by grants from the USDA NIFA AFRI (1758976 to A.H. and E.S.) for …
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Marine Microbe Contains Multitudes
… But SAR324 can be found throughout the water column, from the warm, well-lit surface, to the blue-lit twilight … This research was supported by grants from the Simons Foundation (#329108 and #721223 to EFD) and …
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Doubling Down on Known Protein Families
… ‘Dark Matter’ Microbial communities living everywhere from soils and stomachs to the deep sea are capable of doing … — that is, they are similar to previously known genes from isolate organisms, but we still aren’t sure of their … environment — whether that be soil, animal hosts, marine ecosystems, etc.  “So, they must be doing something …
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Teredinibacter haidensis sp. nov., Teredinibacter purpureus sp. nov. and Teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc Bankia setacea (Bivalvia: Teredinidae) and emended
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Better Genome Editing for Bioenergy
… Department of Energy’s goal of producing sustainable fuels from alternative sources. Moreover, the team says the … The team was thus able to measure sgRNA effectiveness from its lethality and choose only the most reliable sgRNAs … N00014-15-1-2785 . JW acknowledges additional support from the National Science Foundation Graduate Research …
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A More Intuitive Phytozome Interface
… BioMart data warehouse interfaces they have come to rely on from Phytozome, with a more intuitive interface, deployed on … answers to Frequently Asked Questions about the transition from Phytozome v12 to v13. Why is it necessary to retire … pages at  https://phytozome-next.jgi.doe.gov . If a genome from v12 is present in v13, the organism info page will be …
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How to Submit Sequencing Samples
… QC Protocol DNA Extraction 101 : tips, kits, and protocols (from PacBio) Guidance for sample collection and storage (from PacBio) Best practices for High Molecular Weight DNA extraction and quality control (from PacBio) 2) Review guidelines detailing quantity and …
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How Filamentous Fungi Sense Food
… break down the components of plant cell walls, which range from simple to complex carbohydrates, and then convert them … genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently published … as they responded to available carbon sources, which ranged from simple sugars to plant biomass. One of these techniques …
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User Support
… specific milestones, either by automated emails or emails from your Project Manager. Your Project Manager will also …
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Jeremy Schmutz
… strategies for de novo sequencing of eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the …
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User Advisory Committees
… external advisory body, the JAC includes representatives from all specialized JGI advisory and executive committees. …
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