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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and … the perennial grass Miscanthus sinensis has been published. Analysis of the genome sequence also provides insights into … crops such as sugarcane and sorghum. The M. sinensis genome analysis explains the hybrid origin of giant miscanthus ( M. …
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Integrating Experimentation with Data
… in Seattle, Washington.  Topics included:  Environmental Microbiomes Biodesign and Synthetic Biology AI/ML-enabled … The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user facilities … Click to view a downloadable copy of the sponsor prospectus …
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Atif Shahab
… Since 2012, Mr. Shahab has led the development of an integrated platform for tracking JGI's sequencing … laboratory information tracking, and enables efficient analysis and reporting of sequencing projects and their … solutions for large-scale sequencing projects and data analysis pipelines.  …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … question, despite of their well-designed sampling and analysis of their data at the time. Following the … however, didn’t receive unanimous support from different analysis. Most analyses strongly supported Olpidium as the …
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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the design of new experimental approaches to link viruses to their … Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise …
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Rex Malmstrom
… Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … on JGI data platforms, generated from past studies conducted by JGI users. These datasets include an extensive … ecological Harvard Forest project, large datasets from soil microbiome studies collected across various terrains, and …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… the most efficient at making proteins likely factors into why fungi have been so evolutionary and ecologically … and a data scientist at the JGI. Previous studies were conducted on one or few genomes, but Wint’s research expands … Relevant Links: Publication: Wint R et al. Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals …
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Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of the terpene synthase gene family across eucalypt … also thrive in areas that receive a lot of rain.  Previous analysis of the E. grandis reference genome, an … “Nextree” 193.000.570/2009. For the portion of the work conducted by the Joint Genome Institute and the Joint …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers … toward improving crop yields in other grasses. The team conducted several large-scale field experiments and analysis to find relationships between sequence variation … The work conducted by the US Department of Energy Joint Genome …
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Mateus Fiamenghi
… Mateus’s research is focusing on the identification and analysis of Mobile Genetic Elements from Metagenomic Data.  Mateus’s …
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