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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa … Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted from 70 full … accepted through JGI’s calls. Nearly 200 Terabases of data are expected to be generated for the accepted …
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DOE JGI Interns Share Their Summer Experiences
… Many of them spent the summer crunching genomic data at a computer; a few had the opportunity to spend time out in the field, work at the lab bench, and … Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with Matt Blow; Sean …
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From Competition to Cooperation
… 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done … genomes of symbiotic species available: 73 saprotrophs and 62 mycorrhizal species. The 62 mycorrhizal species include 29 … generated by the JGI more than a decade ago. Having these datasets will assist researchers in moving toward functional …
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to their User Executive Committee (UEC) – Jack Gilbert, … in access, analysis and sharing of JGI-generated data. She is also interested in reaching and engaging with … terms. The JGI solicited UEC nominations in late 2022 and the election period concluded on Jan. 6, 2023. With …
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JGI Scientists Pen Genome Watch Articles
… Reviews Microbiology column last year — and there’s more to come in 2020. Researchers at the U.S. Department of Energy (DOE) … metabolism . And postdoctoral researcher Sara Calhoun, data scientist Stephen Mondo, and  Fungal and Algal program … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… wild populations for the first time. For years, Elizabeth (Toby) Kellogg and other researchers at the Danforth Plant … of plants have resulted in a paper published October 5, 2020 , in Nature Biotechnology . Kellogg and her colleagues, … be specific to species or groups of species.  The genome data also revealed that green millet was introduced into the …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… More than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s … early stages, so I can begin biological analysis of the data sooner than I anticipated.” In her message, Dumont …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … that showcase our collaborations and capabilities to enable great science that will help solve energy and … and that’s going really well. And having the sequence data available for us to enable that research will have a …
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Effects of Polar Light Cycle on Microbial Food Web
… with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the norm when it comes to nutrient cycling in polar regions. While microbial … observations regarding the contributions of algae and viruses to the ecosystem were noted, but require further …
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Access to Rock Star Scientists
… Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The students’ research … of the internship program. Candace Cole, UC Merced JGI Mentors : Ben Cole & Axel Visel, Genomics of Plant-Microbial … helpfulness and patience of my JGI PIs, having lots of data to play around with.” …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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How Maize Makes An Antibiotic Cocktail
… at least 15 zealexins, they suspect there are even more to find. Zealexins are produced in every corn variety and … have now revealed that just a handful of enzymes are needed to transform zealexins and related precursors into a bonanza … the ability make zealexins, and harnessed gene expression data from these lines to identify genes associated with …
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