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Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons
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Toward Understanding Phage:Host Interactions in the Rumen; Complete Genome Sequences of Lytic Phages Infecting Rumen Bacteria
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, … DW, Doering DT, Mouncey NJ. Cytochromes P450 involved in bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
SIP experiments shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine … of DOE missions related to clean energy generation and environmental characterization and cleanup. The JGI provides …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … to enable great science that will help solve energy and environmental challenges. Sorghum stands out as a candidate … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
Understanding the shared genetic toolkit of ancestral and … that could be applied toward DOE-relevant bioenergy and environmental interests.  Summary As the planet has changed, … a resource that associates plant’s genetic variants with specific adaptation mechanisms they had identified. For …
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Nick Everson
Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the … Systems & Engineering Division. Prior to his tenure with Berkeley Lab, he served in the US Navy for 6 years as a … to JGI administrative and financial management, facilities, environmental health and safety, and business issues. … …
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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California
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Niche differentiation of bacteria and fungi in carbon and nitrogen cycling of different habitats in a temperate coniferous forest: A metaproteomic approach
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Lipid analysis of CO2-rich subsurface aquifers suggests an autotrophy-based deep biosphere with lysolipids enriched in CPR bacteria
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Digging into Microbial Ecosystems Deep Underground
… so much of what we see on earth in terms of nutrient cycles and biogeochemical cycles…. Viruses play a pretty important … The video complements a recently published paper with first author Amundson in the journal Microbiome . The … into the resources and capabilities of both the JGI and the Environmental Molecular Science Laboratory (EMSL) at Pacific …
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