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JGI-UC Merced Interns Share Their 2021 Experiences
… JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate in professional development enrichment activities. For some students in … Evolution of the Mitochondria Internship … Cross Species Integration of Single Cell Transcriptomes …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the … of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage …
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Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders
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Bacterial response to the 2021 Orange County, California, oil spill was episodic but subtle relative to natural fluctuations.
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JGI User Executive Committee Expands
… Six new members have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint … of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the … Along with the existing UEC members, their areas of study span the research interests of the JGI’s user …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, … categories: Catalog the human virome; Develop tools to study the human virome; Explore how the human virome … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , …
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A Mentor’s Perspective on Training the Next Generation
… Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and contribute to ongoing projects. In one way or another, they’ve all …
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Microbial communities and biogeochemical functioning across peatlands in the Athabasca Oil Sands region of Canada: Implications for reclamation and management
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Four Researchers Join JGI User Executive Committee
… Four researchers have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user facility located at Lawrence Berkeley National Laboratory. Holly Bik of the University of Georgia, … data and expertise to the global research community to study complex biological and environmental systems. The …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have … (affectionately known as “Chlamy” to those who study it) a powerful reference organism for studying … the project was co-led by Daniel Rokhsar, head of the JGI’s Computational Biology Program, along with JGI Computational …
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Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … T, C and G appearing over and over in a dizzying array of combinations, are unremarkable, save perhaps for the absence … Lab). And one of the tools that researchers can apply to study the transcription factors that control how genes are …
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