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Adopt-A-Genome
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… (NSF) that supports underrepresented minorities in science, technology, engineering and math (STEM) fields. More than 20 … Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial Interactions Group who has mentored several of the …
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Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park
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Nandita Nath
… Nandita is involved in developing new methods to improve genome recovery from single cells and …
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Gene Expression: From On-Off Switch to Dial
… approach to fine-tune gene expression. They tested this new methodology in yeast ( Saccharomyces cerevisiae) to … they are historically well-studied, Alper’s team discovered new gene targets to more efficiently grow on these sugars. … applications. This proof-of-concept experiment offers a new approach for fine-tuning gene expression in metabolic …
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W. Berkeley Kauffman
… user samples. His R&D work focuses on the development of new applications utilizing a variety of technologies to …
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An Automated Tool for Assessing Virus Data Quality
… the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from … from the host organism. As reported in Nature Biotechnology , a team from the U.S. Department of Energy (DOE) … from IMG/VR , a database that is part of the Integrated Microbial Genomes & Microbiomes (IMG/M) suite, as well as …
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An Integrated Dataset to Understand Ecosystem Interaction
… the dynamic relationship between poplar trees and their microbial partners. The Science To help better understand … the tree’s production as a biofuel feedstock. Public accessibility to the data made available through this … and small molecules produced by the trees and associated microbial communities. This revealed key metabolic pathways …
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Overview of the Genomes OnLine Database (GOLD)
… the JGI's Genomes OnLine Database and why curated metadata matters. …
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10 From JGI on the 2019 Highly Cited Researchers List
… Animal Science and Molecular Biology & Genetics categories Microbial Systems research group lead and User Programs … for defining virus data quality. Reported in Nature Biotechnology, the work brought together virus experts, … led the plant team at the HudsonAlpha Institute for Biotechnology that worked on an updated reference genome for …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The … of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for identifying mobile genetic elements ( Nature Biotechnology , 2024), and iPHoP , an integrated machine …
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Exploring and Thinking Critically about Scientific Problems with JGI Interns
… to achieve, they constantly collaborated with each other on new ways of presenting and researching science. …
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