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Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI
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Pathway-Centric Analysis of Microbial Metabolic Potential and Expression Along Nutrient and Energy Gradients in the Western Atlantic Ocean
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Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters
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Genes and genome‐resolved metagenomics reveal the microbial functional make up of Amazon peatlands under geochemical gradients
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A Grass Model to Help Improve Giant Miscanthus
… complex genome whose evolutionary history and perennial lifecycle makes it important to study directly. The large and … and contribute to the grass’ efficient perennial life cycle. For example, in the fall the plants store nitrogen in …
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Soil compartments (bulk soil, litter, root and rhizosphere) as main drivers of soil protistan communities distribution in forests with different nitrogen deposition
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A Plantiful Future: Xiaohan Yang
… a renewable energy future? Can they help lock away more carbon? Xiaohan Yang, a scientist at Oak Ridge National …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… (Setaria viridis), a small model grass with a short lifecycle that uses a carbon fixation process known as the C4 pathway, which … the genes that are present in a given species).  “This is a great example of developing a large-scale genome …
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2024 Progress Report
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… Mouncey. Using CRAGE, JGI has established a portfolio of microbial hosts that users can select to be engineered. … aim to inform the engineering of stable, synthetic microbial communities to take advantage of their joint metabolisms. …
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JGI Early Career Researchers Featured in mSystems Special Issue
… sequence reads to link mobile elements such as plasmids to microbial host cells. In a separate article, research … While microbes regulate the planet’s biogeochemical cycles, viruses infecting microbes shape global ecological …
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Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California
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