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Draft genome sequences of Arthrobacter sp. AZCC_0090 and Mycobacterium sp. AZCC_0083 isolated from oligotrophic subsurface forest soil in the Santa Catalina mountains of Southern Arizona
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Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… noted study senior author  Tanja Woyke , who heads JGI’s  Microbial Program . The team mined more than 8,500 publicly … from freshwater ecosystems, including, respectively, the northern Lakes of Canada, the Laurentian Great Lakes, Lake … study from a JGI-led team uncovered giant viruses in the soil for the first time. The current study applied a …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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JGIota: Looking Back at Methane-Making Microbes
… down plant matter. So since 2010, the JGI has supported researchers studying those microbial methane-makers. Eventually, that could help us … Sinead Leahy (New Zealand Agricultural Greenhouse Gas Research Centre) and Bill Kelly (AgResearch). …
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Honey Bee Gut Microbiota Divvy Up Dinner
But scientists have wondered exactly how the microbial community carries out its helpful metabolism: … what biochemical processes? Now, an international team of researchers has identified the major metabolic roles of … to the human small intestine; and  Bifidobacterium,  which dwells primarily in the rectum, downstream of the ileum and …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. … around this structure to facilitate sharing.  Recently, researchers have been able to study both sides of this … polyadenylated transcript capture — any RNA that is from eukaryotes — we were able to capture both plant and fungal …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… to address climate change: pulling atmospheric carbon into soil and boosting biofuel feedstocks with less fertilizer. … around this structure to facilitate sharing.  Recently, researchers have been able to study both sides of this … polyadenylated transcript capture — any RNA that is from eukaryotes — we were able to capture both plant and fungal …
Learn more
An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. … the genomes of these viruses and associate them with their microbial hosts. However, assembling viral genomes from … from IMG/VR , a database that is part of the Integrated Microbial Genomes & Microbiomes (IMG/M) suite, as well as …
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Introducing New Members of the JGI User Executive Committee
… – go here to view the full roster of members. Each of the researchers had their own reasons for wishing to serve on the UEC. For microbial ecologist Gilbert at the University of California … in mind. Microbiome ecologist Shade became Director of Research at France’s Centre National de la Recherche …
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The Case for Conservation
The work wraps more than a decade of working with researchers at the U.S. Department of Energy (DOE) Joint … Training Grant, Sigma-Xi Grant-In-Aid of Research, and Society for the Study of Evolution Rosemary …
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