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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or … The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … new views of these relationships.  Recently , researchers used population genomics to find that while archaeal …
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Sue Rhee
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State … University campuses for biotechnology education as part of a course-based undergraduate resource experience. Hear …
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JGI announces 2025 Functional Genomics awardees
… Woolston. ] Each year, the JGI accepts proposals for state-of-the-art functional genomics research from scientists who … Tapping into these functions allows researchers to use them for engineering applications in support of … program, these projects integrate cutting-edge genomic data with predictive modeling and bioengineering to advance …
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New and Improved: Eucalyptus Reference is Now Accessible
… a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with … both haplotypes, meaning it separately represents the sets of chromosomes inherited from each parent. It also has … crops that supply wood and fiber for various industrial uses ranging from timber to paper, biomaterials and …
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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … the design of new experimental approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts …
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JGI Scientists Pen Genome Watch Articles
… more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … metabolism . And postdoctoral researcher Sara Calhoun, data scientist Stephen Mondo, and  Fungal and Algal program …
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New Research Sheds Light on Diversity in the Deep Sea
… get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, … and metabolic potential of the communities studied. The datasets are available on the JGI’s  Integrated Microbial …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic reprogramming. The Science If it … from The Ohio State University and the University of Michigan studying how virus infections cause significant … changes in marine microbes, the answer is no. They refer to the infected microbial cells as virocells, a change in …
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