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Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
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ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies
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Natural Variation in the Multidrug Efflux Pump SGE1 Underlies Ionic Liquid Tolerance in Yeast
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The JGI Data Portal: Improving User Experience
The human-centered, agile collaboration between the JGI and the … from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a … and development,” said Linda Setchell, a Truss product manager who is part of the joint JGI/Truss team. Based on …
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Behind the Paper: Hot Springs Metagenomics
Adapting the graduate research experience amidst a global pandemic   …
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I-Min (Amy) Chen
… and object-oriented data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Microbial colonization and persistence in deep fractured shales is guided by metabolic exchanges and viral predation
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Ecological Assembly Processes Are Coordinated between Bacterial and Viral Communities in Fractured Shale Ecosystems
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Help from Citrus’ Bitter, Hardier Cousin
The chromosome-scale genome sequence of trifoliate orange yields clues to … to China and now disseminated around the globe, often as a rootstock for  Citrus , appeals in other ways. It better …
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Seasonal Succession Leads to Habitat-Dependent Differentiation in Ribosomal RNA:DNA Ratios among Freshwater Lake Bacteria
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists to …
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UC Merced Interns Reflect on Their JGI Summer Projects
Over the course of eight weeks this past summer, 10 students from UC Merced … new data visualization tools, to using natural language processing techniques to categorize genetic information. … Docs, and GitHub enabled virtual collaboration. JGI also hosted events to enable students to showcase their work and …
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