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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities … into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes for bioenergy, … automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables …
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Len Pennacchio
Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast …
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CoverM: Read alignment statistics for metagenomics.
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Fungus Fuels Tree Growth
Researchers start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science … studied what happens to the tree’s physical traits and gene expression when the fungus is present. The Impact Black …
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Daniel Udwary
… group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene clusters in bacteria and fungi. Prior to joining the … (1996) … List available on Google Scholar … Education … Publications …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated microbes from … activated cell sorting (FACS) into smaller, less diverse pools before being subjected to genome sequencing. …
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The JGI announces 2024 awardees for our Community Science Program annual call
… our 2024 Community Science Program Annual Call. “It’s exciting to see the diverse portfolio of successful CSP proposals this year,” noted Tanja Woyke, …
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NeLLi — Symposium on New Lineages of Life
The DOE Joint Genome Institute hosted the hybrid “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the … to a new appreciation for the extent of diversity. The phylogenetic and functional characterization of this novel …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … than 5,000 data sets of RNA sequences (metatranscriptomes) generated from diverse environmental samples around the world, resulting in …
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Annotation of metagenome short reads using proxygenes
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UC Merced Interns Reflect on Their JGI Summer Projects
Over the course of eight weeks this past summer, 10 students from UC Merced … using natural language processing techniques to categorize genetic information. Learn more about their work here in a … to embark on a career in genomics, and to help foster a diverse future workforce in science. Since the program’s …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit (GPU)-based … Computing Facility (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … “The tools we use to process and analyze these data are diverse and porting these codes to GPUs present unique …
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