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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing alga into a powerful platform for … Because of the ease with which the alga can be genetically engineered, it has the potential to be imbued with … This work was supported by the Department of Energy (DOE) Office of …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… With a new methodology, scientists are now getting more complete … the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most … The traditional way of collecting them is through a method called Multiple Displacement Amplification, and most genomes …
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Jasmyn Pangilinan
… Jasmyn provides bioinformatics tools and analysis support for user science, with a focus on metagenomes. Passionate about automation and collaboration, …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On … of 250 plant genomes and has been under active development for over 5 years, provides users with the genome browsers, … in v13. However, the genomes included in PhytoMine will typically lag the full set of released genomes available in …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome … also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … the set of chromosomes from each ancestor is called a subgenome. Session and Rokhsar, building on work …
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Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that … & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able … even animal and human (for the first time) gut and taxonomically classified into 27 distinct clades (17 of them without …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against … Maize ( Zea mays ) produces a plethora of antibiotics called zealexins. Even though scientists have identified at … revealed that just a handful of enzymes are needed to transform zealexins and related precursors into a bonanza of …
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IMG/VR
… JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest … of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of … the SCGSR research experience was “an ideal opportunity for me to get real-world experience.” As he finalizes his …
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