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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on … of biology and computer science, to reveal clues about how microbial and bacteria communities influence the … slides and anticipating the inevitable questions about the study’s methods and analysis, Lawrence is spending time on …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements that showcase our … challenges.   Usually, plants have the upper hand against any kind of biomass breakdown. They’ve spent millions … there’s opportunities for borrowing and porting parts from nature — enzymes, transporters, pathways — into microbes …
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … richardii, or C-fern — came out in the September issue of Nature Plants . C-fern has a genome approximately three … Filling in the Plant Tree of Life … Genome Insider …
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The Fungi That Survive In Antarctica
… of Tuscia researchers Laura Selbmann and Claudia Coleine are working with scientists from around the world – and the JGI – to …
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JGI announces 2025 Functional Genomics awardees
… Kathleen Scott, Tiffany Taylor, Setsuko Wakao and Benjamin Woolston. ] Each year, the JGI accepts proposals for … genomics research from scientists who translate genomic information into biological function. Through our  CSP … crops through transcriptional network mapping, developing microbial systems to convert renewable feedstocks into …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, … to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … not strictly necessary, as you can get finished quality microbial data polishing with just the PacBio data     …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in … temperatures characteristic for polar oceans. In this study, they’ve cracked open the genome of another polar … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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First Monoploid Reference Sequence of Sugarcane
… and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes … genomes are more difficult to sequence and assemble, in turn limiting the use of modern, genomic breeding in … of the gene-rich part of the sugarcane genome. Reported in Nature Communications , their approach relied in part on …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… 2025 Community Science Program Annual Call. These projects include cutting-edge research into microbial communities — from freshwater estuaries reshaped …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… In   April 2020, we mark both the 50th celebration of Earth … 22, and DNA Day on April 25.  On March 17, 2020, a shelter-in-place order for all residents took effect in six San Francisco Bay Area counties. The JGI, located at … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Virus-Microbe Interactions of Mud Island Mangroves
…   Later this year, Ian Rambo, a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research was … Rambo’s work was overseen by Susannah Tringe, head of the Microbial Systems group. He also worked with Simon Roux and …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from … the family tree for Lentinula. Within those samples, this study also tracks the enzymes these fungi use to break down … the GENOBIOREF (BIO2017-86559-R) project of the Spanish Ministry of Science and Innovation (cofinanced by FEDER …
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