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JGI Announces 2023 Community Science Program Awardees
… to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … important for carbon storage, nutrient cycling, and climate change; and biofuels, biomaterials and bioproducts. Learn …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights into how these ocean … and longtime JGI collaborator Sabeeha Merchant’s group. In 2011, they inventoried a swath of blueprints to find parts … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI … piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since early 2020, people all over the world have been forced to confront … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science … researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing plant genomes. …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … of all kinds,” noted Igor Grigoriev, head of the JGI’s Fungal & Algal Program, including work with Olivier Vallon …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … such as sorghum internode time course data from 4 different genotypes by Dr. John Mullet; Dr. Tom Juenger and his … are two different portals where this data is currently hosted. The first one is the JGI plant portal called  …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have … near-complete genomes of P. hallii var. hallii (99.2% complete) and P. hallii var. filipes (94.8% complete) and resequenced a host of natural collections from across the species range. …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… New 5-year strategic plan outlines how the JGI will advance the bioeconomy, leveraging … Serve the Changing Planet (download a copy at jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of … which builds on the DOE’s interest in mitigating climate change. These insights will help develop sustainable …
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Ancient Algae Reveal Secrets of Plant Evolution
… land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  … Zygnematophyceae , scientists have enhanced our understanding of how early plants transitioned from water to land. Key … three strains of  Zygnema circumcarinatum . Published  May 2024 in  Nature Genetics by an international research …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 … and algae’s roles in nutrient cycling, now a facet of the  Fungal & Algal Program . For example, green algae represent … in learning how environmental conditions influence viral-host interactions in three groups: cyanophages, …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational … group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer (2013-2016). … AB in Physics, Princeton University, NJ MS in Theoretical …
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Biosynthesis and Emission of Stress-Induced Volatile Terpenes in Roots and Leaves of Switchgrass (Panicum virgatum L.)
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