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Boosting Small Molecule Production in Super “Soup”
… said. “We’re exploring not just what can be enabled by this technology, but also what we can understand through this technology.” “This is a fantastic example of …
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SPRUCE-ing Up Science
… National Laboratory, the HudsonAlpha Institute for Biotechnology, and Duke University, published their research … of biology and computer science, to reveal clues about how microbial and bacteria communities influence the … mediate Sphagnum peatmoss resilience to warming . New Phytol. 2022 Jun;234(6):2111-2125. doi: …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Tel Aviv University in Israel, the National Center for Biotechnology Information, and the U.S. Department of Energy … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then … higher-level classifications of virus groups (phyla.) The new sequences are filling in some gaps on existing virus …
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Functional analysis of Salix purpurea genes support roles for ARR17 and GATA15 as master regulators of sex determination
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Secrets of the Needles: What Microbes do on Conifer Leaves
… do on the leaf surface. More specifically, they found that microbial community composition and functional potential … chemicals and surface polymers as metabolic substrates. Microbial community composition varied across both sites and … the JGI here . Bennett is applying the same experiment to a new environment. She is currently working on her thesis to …
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Tomas Tyml
… and genomics to study endosymbiotic associations within microbial eukaryotes. He hopes to broaden our understanding …
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A Collaboration to Improve Plant Genome Annotations Across Species
… works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement for … groups joined the project to contribute to the data for six new species. I must mention that some of the members from … in currently available 17 other species. And you can also access the differentially expressed genes and visualize …
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JGI-UC Merced Interns Share Their 2021 Experiences
… in their academic career enjoyed the chance to develop new skills needed for their PhD research. And for the first … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on Microbial Root …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… JGI-supported project studying the world’s rivers and their microbial communities. He’s focusing on the Arkansas River … in how general environmental stressors, um, alter microbial biomass and then what the consequences are for the …
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JGI@25: Building a Better Bean
… Schmutz of the JGI and the HudsonAlpha Institute for Biotechnology; Phil McClean of North Dakota State University; … two points of origin in Central and South America.   “Technology was actually quite a bit different than it is … the bean spawned from this original research is the “slow-darkening” trait. Traditionally beans have had a shelf-life …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic … microbes, the answer is no. They refer to the infected microbial cells as virocells, a change in name first … 20% to 40% of the microbes are infected at any given time. Microbial viruses can thus have significant impacts on the …
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