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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… in regulating microbial cellulose production and biofilm formation, which affects a number of environments, including … their new biosensor for cyclic di-GMP. The team created functional biosensors by finding an insertion site for the … within the Nano-lantern scaffold. They then mined sequence databases for homologous YcgR proteins and chose a set of 92 …
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Defining the Sphagnum Core Microbiome across the North American Continent Reveals a Central Role for Diazotrophic Methanotrophs in the Nitrogen and Carbon Cycles of Boreal Peatland Ecosystems
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New and Improved: Eucalyptus Reference is Now Accessible
… improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new … are 900 species of eucalyptus. The trees are fast-growing plantation crops that supply wood and fiber for various … with GENESPACE, a computational tool for comparative genomics.   With a more robust reference genome, researchers …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… by a growing human population and increasing demand for agricultural products.  Sorghum bicolor (L.) Moench is … by the JGI in 2009 and it is considered to be a Flagship Plant. By uncovering and characterizing the mechanisms … and how these conditions impact the crop and its microbiome. For three consecutive years (2016-2018), …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a … my first publication and it feels so rewarding,” Wint said. For Axel Visel, JGI Science Deputy and a co-founder of the … of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted on one or few genomes, but Wint’s …
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Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass
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Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance
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Sphingomonas palmae sp. nov. and Sphingomonas gellani sp. nov., endophytically associated phyllosphere bacteria isolated from economically important crop plants
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint … the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four … many varied environments? Now, a recent study published in Microbiome has uncovered that SAR324 encompasses four … help regulate the global carbon cycle — fixing, transforming, and respiring carbon. Understanding the metabolisms …
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A 5-enolpyruvylshikimate 3-phosphate synthase functions as a transcriptional repressor in Populus
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