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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of … community able to not just analyze but also create DNA sequences mimicking an array of microbial life. By … of DNA; genes analogous to paragraphs;  genomes equate to complete written works. Using large amounts of genomic data …
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Simon Roux
… the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the design of new experimental approaches to link … Nayfach et al., 2020. CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the Sequencing Technology … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 … genes has helped pave the way for the conception of a pangenome. Recordings and recaps of all three keynote talks … Jill Banfield approached Doudna with repeated genetic sequences (already known as CRISPR) that came up in her …
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Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery
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Genomic Signatures of Strain Selection and Enhancement in Bacillus atrophaeus var. globigii, a Historical Biowarfare Simulant
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Mo than Meets the Eye: Genomic Insights into Molybdoenzyme Diversity of Seleniivibrio woodruffii strain S4T
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of that machine — photosynthesizers’ DNA and RNA. These sequences provide a list of machine parts, and an idea of …
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The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation
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Implications of the Plastid Genome Sequence of Typha (Typhaceae, Poales) for Understanding Genome Evolution in Poaceae
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High-resolution metagenomics targets specific functional types in complex microbial communities
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