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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality … most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … sugarcane  genome , the JGI provides foundational genetic information that crop breeders can use to improve sugarcane …
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How Maize Makes An Antibiotic Cocktail
Maize produces a family of compounds that protects it against infections — using … ability make zealexins, and harnessed gene expression data from these lines to identify genes associated with zealexin …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … multicellular development. “DAP-Seq is the main source of information in the project,” Nagy added. “Since the FUNCODE …
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Teredinibacter haidensis sp. nov., Teredinibacter purpureus sp. nov. and Teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc Bankia setacea (Bivalvia: Teredinidae) and emended
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Better Genome Editing for Bioenergy
A team has optimized a crucial part of CRISPR-Cas9 technology to … Department of Energy’s goal of producing sustainable fuels from alternative sources. Moreover, the team says the …
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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research … data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … of Application Development Systems at Gene Logic, Inc. from 1997 to 2005, responsible for the development of key … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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JGI@25: Solving the Mystery of the Missing Oil
In honor of the JGI's 25th anniversary in 2022, we have revisited a … energy and environmental challenges. Within days of the Deepwater Horizon oil rig explosion that dumped nearly five …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
In honor of the JGI's 25th anniversary in 2022, we have revisited a … portal Phytozome. The combination of field data and genetic information has allowed the research team to associate …
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Building Sphagnum Genomic Resources
Sphagnome data would enable researchers’ insights on their … Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … research results, building on the availability of genomic information from two distinct environments, strengthen the …
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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and incredibly … — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … gene duplications, and even more ancient gene transfers from bacteria have all armed the plant with an array of …
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