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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria … hold clues to processes like biodegradation, with potential applications in industry and biotechnology for the … effects of climate change. The team’s study used samples from the area immediately surrounding AMF’s long filaments, …
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Understanding Wildfire Recovery, Starting in Soil
… and nitrogen, paving the way for future plants and trees to grow. However, fire changes the microbes within the soil. … team of researchers collected soil samples from a wildfire that burned at the Colorado-Wyoming border, … unburned, low, moderate and high-burn severity sites. From those samples, they reconstructed and examined over six …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
Though visible to the naked eye, microscopy reveals unexpected complexity … DNA more organized. “The big surprise of the project was to realize that these genome copies that are spread throughout … symbionts in sulfur-rich mangrove sediments not far from his lab when he first encountered the bacteria. “When I …
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Nick Everson
Resources, Facilities, IT, Shipping and Receiving, Lab Automation, and Administration departments. He previously served as JGI’s Business Manager from 2007 to 2012, overseeing all financial and logistics … 2015 Served on the Council of UC Staff Assemblies (CUCSA) from 2015 to 2018, representing Berkeley Lab in this UC-wide …
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Extracting the Secrets of Secondary Metabolites
… for growth yet essential for survival, may now be easier to characterize following a proof-of-concept study in which … CRAGE allows for the transplanting of these BGCs from one organism into an alternate host via a landing pad … and their pathways could fuel further agricultural applications for pest control and understanding how the …
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department … on their summer projects. Watch the short video here to see what they had to say about their experiences and what … “ Detecting Isotope Bonds in Proteins. ” Yu Lu : ”I really enjoyed meeting and getting to know many of the …
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Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect … “It’s a unique capability; no one else can do it in the world at this scale.” A bottleneck in the DAP-seq protocol, … The technology expresses the transcription factor proteins from a DNA template amplified directly from either genomic …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute … also one of the lead organizers of the Viral EcoGenomics & Applications (VEGA) Symposium , which will take place later … networking opportunities and fosters discussions on how to capture and characterize viral diversity, understand the …
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Axel Visel
… at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max Planck Institute in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in … Merced. Dr. Visel also served as JGI Interim Director from March 2016 – March 2017.   … Axel Visel is the JGI's …
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Three Join the JGI User Executive Committee
… month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of Oak Ridge National Laboratory and … programs and brings expertise in metagenomics and novel applications for long-read DNA sequencing. As a UEC member, … and help develop programs to increase participation from minority-serving institutions in JGI user programs. The …
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JGI announces second round of 2023 New Investigator awardees
From left to right: [above] Emma Bell, Mallory Choudoir, Sneha Couvillion, Tobin Hammer, Christina Hazard, Rachel Mackelprang, Brook … for novel research projects — aligned with DOE missions and from PIs who have not led any previously-accepted proposals …
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