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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… resonance energy transfer (BRET)-based biosensors. In general, CSL biosensors produce large signal changes, but … cyclic di-GMP. The team created functional biosensors by finding an insertion site for the E. coli cyclic di-GMP …
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Ian Blaby
… view to developing a deeper understanding of sequence-based gene function. … B.Sc. (HONS) – University of Wales, Cardiff, Genetics Ph.D. – University of Cambridge., Microbial … learning approach to reveal the functional links between gene networks. BMC genomics. 20:12. 2019 Anderson et. al., …
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Role of diversity-generating retroelements for regulatory pathway tuning in cyanobacteria
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Webinar: SIP technologies at EMSL and JGI
… can see it. 11. Q: Since Jim Moran was able to identify the major proteins that incorporated C13 and sort of the isotope … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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A User-Centered Approach to Accessing JGI Data
… data sets within groups, such as plants (via Phytozome) or fungi ( MycoCosm ). “We have made a concerted effort to … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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Uncovering Novel Genomes from Earth’s Microbiomes
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … A public repository of 52,515 microbial draft genomes generated from environmental samples around the world, … into microbial diversity and function.” He is already finding ways to utilize the catalog in his own research on …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Trent Northen
… Click to learn more about the program's areas of focus, major initiatives and more.  … Swift CL, et al. Anaerobic gut fungi are an untapped reservoir of natural products. … Genome Engineering Enables Rapid Activation of Biosynthetic Gene Clusters. Nat Microbiol. 4(12):2498-2510. doi: …
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Tanja Woyke
… Click to learn more about the program's areas of focus, major initiatives and more.  … J (2015-2019), Scientific Data (2017-2019). Reviewer for major journals and funding agencies, including Nature, … Nature Communications, Nature Protocols, Nature Reviews Genetics, ISME J, Nucleic Acids Research, DOE Small Business …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… of “microbial dark matter”–that uncultured and unknown majority of microbes in, on and around the planet–through … “landmark” 2013 Nature paper , which uncovered nearly 30 major previously uncharted branches of the tree of life. A …
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The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus
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