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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… to customize the crop for additional end products. The genetic diversity within this set of plants, each with a … genome, and these gardens allow researchers to test what genes affect the plant’s adaptability to various … interest in harnessing the crop as a versatile candidate biomass feedstock for producing sustainable alternative …
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Extracting the Secrets of Secondary Metabolites
… CRAGE-CRISPR combo helps further demystify biosynthetic gene clusters.  The Science Microbial secondary metabolites, … is a technique researchers can use to integrate large genetic payloads directly into diverse microbes. Combining … with a powerful addition to their toolkit to study gene function. As a demonstration, the researchers used …
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In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing alga into a powerful … of an oil-producing green alga, and demonstrated precise gene targeting in the genome in the November 2025 issue of … Also notable, researchers found it is missing 33 genes thought essential for photosynthesis, yet still …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… work enabled by the JGI’s Community Science Program (CSP) . The Impact Cyclic di-GMP controls microbial … work was enabled in part by a proposal to the DNA Synthesis CSP call , and the results are described in ACS Chemical … resonance energy transfer (BRET)-based biosensors. In general, CSL biosensors produce large signal changes, but …
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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MycoCosm Tutorial
… Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped with …
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Bioenergy sorghum stem density increases threefold following internode elongation due to continued accumulation of lignified cell walls and complex regulation of genes involved in cell wall biosynthesis
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Meeting Report: “Metagenomics, Metadata and Meta-analysis” (M3) Workshop at the Pacific Symposium on Biocomputing 2010
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Understanding Wildfire Recovery, Starting in Soil
… across a spectrum of burned soils. By connecting microbial genes with functions useful for forest recovery, this study … on post-wildfire soil microbiomes have focused on marker gene analyses, which take inventory of which microbes are … interact; beyond bacteria, these samples harbored fungal genomes, including a novel Leotiomycetes species and …
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Scaling Up Existing Skill Sets
… graduate student Mentors: Igor Grigoriev and Asaf Salamov, Fungal and Algal Program What effect has your summer … During my internship, I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt …
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Katherine Louie
… T, et al. MAGI: A Method for Metabolite Annotation and Gene Integration. ACS Chem Biol. 2019;14: 704–714. 6. … in rhizosphere microbial community assembly. Nat Microbiol. 2018;3: 470–480. 7. Louie KB, Bowen BP, McAlhany S, Huang Y, …
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