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How Maize Makes An Antibiotic Cocktail
Maize produces a family of compounds that protects it against infections — using surprisingly few enzymes. The … called terpenoids, which have a structure belonging to a group of chemicals called terpenes. Terpenes are important in … Facility, through its  Community Science Program . And the work is part of a  larger CSP Functional Genomics proposal …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program … of our long term efforts to contribute towards a diverse workforce and scientific community (working with the JGI) as … that they provide the “funding and administrative/faculty support so that they can deliver these programs to our …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … number of 8X individuals that had been collected from field work. When viewing the full distribution of switchgrass on a … idea that 8X switchgrass was an unremarkable, homogenous group and raised several important questions. Where did the 8X …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and … explained: “One of the hallmarks of JGI is our diverse workforce and our diverse collaborators around the world. … funded by the National Science Foundation (NSF) that supports underrepresented minorities in science, technology, …
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A Community Resource for Secondary Metabolite Researchers
Collaboratory encourages user engagement. The Science In addition to the core set of "primary … environment. Many secondary metabolites are produced by groups of genes known as biosynthetic gene clusters (BGCs.) As … BGC sequence data from over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The …
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Marcel Huntemann
Marcel is in charge of several production pipelines (gene calling, functional annotation and methylomics) … that run on microbial genomes and metagenomes. He also works on automating intra-department data exchange and …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has … DW, Doering DT, Mouncey NJ. Cytochromes P450 involved in bacterial RiPP biosyntheses. J Ind Microbiol Biotechnol. …
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JGIota: The Algae Nicknamed ‘Chlamy’
This shorter episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii – that’s … Berkeley plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that … over 20 years, to understand how the freshwater ecosystem works.  So a few years ago, when they set out to analyze 500 …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. … for females. To better understand how sex determination works in shrub willow, researchers investigated the … two species and, perhaps, more generally. … This work was supported by the NSF Dimensions of Biodiversity Program …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
In honor of the JGI's 25th anniversary in 2022, we have … partnered with the National Institutes of Health. The DOE works with the National Nuclear Security Administration to … Han, C., Gordon, L. et al. The sequence and analysis of duplication-rich human chromosome 16 . Nature. 432, 988–994 …
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Gene Expression: From On-Off Switch to Dial
Fine-tuning metabolic gene expression helps identify variants … to identify variations of essential genes in metabolic networks that were missed using traditional approaches. This … Institute, a DOE Office of Science User Facility, is supported under Contract No. DE-AC02-05CH11231. …
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