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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute … seagrasses, considered marine flowering plants, and their microbiomes. She is exploring the seagrass rhizosphere in … improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and used by …
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Len Pennacchio
Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio received his Ph.D in … … 2021-  NLM Board of Regents Working Group on “NIH Comparative Genomics Resource” 2021-  Co-Chair, “Advances in …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… town along the Baja California coastline in Mexico. While conducting early field studies related to her thesis on cone … UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first … today. I didn’t know anything about Principal Component Analysis (PCAs) when I first started, and overall found …
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Computationally Classifying Fungal Lifestyles
… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … more information about speciation events. … The work conducted by the U.S. Department of Energy Joint Genome … IOS-1456958 . Sequencing of  Dothideomycetes genomes were conducted as part of the 1000 Fungal Genomes Project …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific … students (and their mentors) how to begin establishing a professional presence through getting credit for any scientific contribution they make, whether as part of a course or internship, and before ever publishing a …
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Gene Expression: From On-Off Switch to Dial
… to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene expression allowed researchers to identify … Science and Engineering Graduate Fellowship. The work conducted by the U.S. Department of Energy Joint Genome …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, and even … attached to something in the sediment like a leaf.” The lab conducted some microscopy studies over the next couple of … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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A Complex Confection Decoded: Sugarcane Reference Genome
… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … and https://doi.org/10.46936/10.25585/60001194) conducted by the USA Department of Energy (DOE) Joint Genome … with Lawrence Berkeley National Laboratory. The work conducted at CIRAD was supported by the International …
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Extracting the Secrets of Secondary Metabolites
… survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … pharmaceuticals, biofuels and beyond.  … The work conducted by the US Department of Energy Joint Genome …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose debris, mobilize nutrients from that … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome … The proposal targets the CSP focus area in plant microbiomes, as well as those in inter-organismal … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Fungus Fuels Tree Growth
… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science … fine-tune their engineering efforts of both plants and root microbiomes to grow energy crops more efficiently. Summary … LLC, under contract DE-AC05-00OR22725 for the DOE. The work conducted by the DOE Joint Genome Institute, a DOE Office of …
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