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… places that are considered to be inhospitable to humans are of particular interest. Matt also supports various CSP and …

… researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … “Once you have a landing pad in a strain, you can deliver multiple types of payloads, such as individual genes, whole …

… get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … metagenomic sequencing to the study as well as  genome analysis, providing authors a more complete picture of the … funded by the US-National Science Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 …

The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … communities, with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope probing (SIP) …

… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified fungal gene families that help determine … Office of Science of the U.S. DOE under Contract No. DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: …

UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the area in summer 2016.  She described the microbial diversity patterns of … today. I didn’t know anything about Principal Component Analysis (PCAs) when I first started, and overall found …

… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … dead cells recorded. Samples were taken again at two, six, 12 and 24 hours. By the 24-hour mark, these algae showed … Berkeley National Laboratory (Berkeley Lab). In their analysis, they found the salinity changes led the algae to …

Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly Cited Researchers , which includes 10 … Salamov were part of a team that presented the first large analysis of an Aspergillus fungal subgroup, section Nigri. …

This is the third and final episode of our series on a giant metagenome assembly from … In the last two episodes, we’ve covered the specialized software and supercomputers behind this project. But every part of this project depends on lakewater samples — so this …

In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …

This series is the story of a giant metagenome assembly from Wisconsin’s Lake … large datasets with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two supercomputers — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research …

A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … assimilated carbon into the soil, reducing the amount of CO2 emissions from decaying leaves and woods into the … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …