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… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … types, and analytical protocols that permit gene expression analysis across plants and add additional experimentally … time course data from two ecotypes of  Panicum hallii and multiple switchgrass ( Panicum virgatum ) experimental data. …

… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi again, and welcome to … project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s …

… here today, and we wanted to talk to her about a whole list of things. So we have a Scripps background shared together, … inside them. And this was, I think it must’ve been about 2001, maybe, and so it was before smartphones and before … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …

… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in … currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to … The U.S. Department of Energy Joint Genome Institute …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … large polyploid genome, which means most genes are found as multiple copies across the chromosomes. In a follow-up study …

… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … Honey bees are invaluable pollinators — cupids of the plant world facilitating the remixing of genes in the … that interested the authors was that an evolutionary analysis of  Bifidobacterium strains in honey bees and …

… key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data … science and projects through implementation of advanced analysis pipelines and tools as well as development and …

… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” …

… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … Many plants, sugarcane included, are polyploid and have multiple copies of chromosomes. Sugarcane accounts for 80% … partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane …

… genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single … are available. The genome assemblies highlight the multiple advances in sequencing technologies applied to the … could lead to the discovery of genes that could be used for multiple biotechnological applications. These applications …

… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and … National Laboratory. Letters of Intent are due March 16, 2022 to freely access resources at multiple DOE user facilities through the FICUS research …