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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … Honey bees are invaluable pollinators — cupids of the plant world facilitating the remixing of genes in the … that interested the authors was that an evolutionary analysis of  Bifidobacterium strains in honey bees and …
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Yasuo Yoshikuni
… Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of DNA synthesis, strain engineering, and biosystems design … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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Neha Varghese
… key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data … science and projects through implementation of advanced analysis pipelines and tools as well as development and …
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You Can Move, But You Can’t Hide
… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in … currently has more than 700,000 plasmids from genomes, metagenomes and metatranscriptomes. To lower barriers to … The U.S. Department of Energy Joint Genome Institute …
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Expanding Virophage Diversity
… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … including over 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” … 12-39. “Overall,” the team concluded, “we provide a global analysis of the diversity, distribution, and evolution of …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … large polyploid genome, which means most genes are found as multiple copies across the chromosomes. In a follow-up study … (8X). They found that while the 8X variety was found in multiple states and environments, the 4X variety was more of …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to … on JGI Advisory Committees are outlined in this Code of Conduct. … users and their science including technical capabilities offered, proposal review procedures and the annual meeting. …
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi again, and welcome to Episode 6 of Natural Prodcast. What you’re going to get here is the …
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Atif Shahab
… Since 2012, Mr. Shahab has led the development of an integrated platform for tracking JGI's sequencing … laboratory information tracking, and enables efficient analysis and reporting of sequencing projects and their … solutions for large-scale sequencing projects and data analysis pipelines.  …
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Katherine Louie
… efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … spectrometry workflows for polar and nonpolar metabolite analysis, creation of large metabolite databases by running … standards, and development of high-throughput untargeted analysis pipelines.  Beyond profiling over 10k samples/year, …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The … J., Terry, A. et al. The DNA sequence and comparative analysis of human chromosome 5. Nature. 431, 268–274 (2004). …
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