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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to … B.S. in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared a look back at the JGI’s history, from its beginnings in the sequencing for the Human Genome Project out … in 2006 when the JGI transitioned from human to microbial genetics. Drell held the role until he retired in 2018. …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and Science Programs Deputy Axel …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists … , PCT application PCT/US2021/018050 (published 2021). Arkin, AP, et al. KBase: The United States Department of Energy …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI … Nayfach and  Nikos Kyrpides , was  recently published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, a postdoctoral fellow … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous … Blurring the Line Between Plasmids and Phages … Polymorphisms Created by Transposable Elements … Evolution of the Mitochondria Internship …
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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria Streptomyces is more than just a funny word. The … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at … ActinoBase Data Portal …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying … more than 10 papers, including two Nature Plants publications, in five years, have come out of the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Yasuo Yoshikuni
… has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of DNA synthesis, strain engineering, and biosystems design for DOE-mission-relevant … to learn more about the program's areas of focus, major initiatives and more.  …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … . Huberiarchaeum. Both organisms are part of the DPANN superphylum of Archaea. This pair is abundant in two subsurface …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help … analysis identified fungal gene families that help determine if these fungi act as friends or foes. The Impact … communities comprised of fungi and bacteria can thrive in plant roots. They play key roles in maintaining the …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements that showcase our … challenges.   Usually, plants have the upper hand against any kind of biomass breakdown. They’ve spent millions of years …
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