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DAP-seq Drives Robust Mapping of Gene Regulation
… assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated is like deciphering the complex … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory. “These proteins’ binding … of Science User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Cultivating Symbiotic Antarctic Microbes
… Nanohaloarchaeota cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … cycle. The JGI is sequencing large numbers of microbes and microbial communities that contribute to carbon cycling, and … Antarctic Science program (project 4031). The work conducted by the US Department of Energy Joint Genome …
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the Institut National de la Recherche Agronomique (INRA) in France and Igor … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine microbial chemical production. The Science Soil bacteria in … (JGI), a DOE Office of Science user facility located at Berkeley Lab, screened dozens of growth conditions and found …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … opens the possibility of using phages to engineer microbial communities. One day, these phages could boost … of Energy, Office of Science, Biological and Environmental Research, Early Career Research Program awarded …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This … and seven graduate students from UC Merced through their long standing internship program. In just two months, the … W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein Bendall : “It’s great …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted … Program was brimming with excitement and determination as they came onsite. From data carpentry to science … Morgan Lavenstein Bendall and mentor Juan C. Villada, Ecology & Evolution of Self-Catalytic Introns across Earth’s …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have … and Sabeeha Merchant of UCLA. Merchant is now at UC Berkeley and also a faculty scientist in the Berkeley Lab … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish in hypersaline environments, and researchers are interested in learning how … adapt from marine to hypersaline conditions by studying the microbial communities in Antarctic lakes, some of which have …
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Tomas Tyml
… Tomas uses traditional cultivation methods along with microscopy and genomics to study endosymbiotic associations within microbial eukaryotes. He hopes to broaden our …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in … (JGI)*, a national user facility located at Lawrence Berkeley National Laboratory, and add additional gene …
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Introducing New Members of the JGI User Executive Committee
… Committee (UEC) – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI users already serving on the UEC – go here … had their own reasons for wishing to serve on the UEC. For microbial ecologist Gilbert at the University of California …
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