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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… addition to the synthetic biologist’s toolkit: a technique for  c hassis (or strain)-independent  r ecombinase- a … “CRAGE is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using … domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, “Once …
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Ben Bowen
… projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and chemistry for advanced analysis, modeling, and data integration. Dr. Bowen’s expertise in spectral …
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Doubling Down on Known Protein Families
… the collective power of more than 26,000 microbiome datasets, all accessible through the publicly available  … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists …
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Partnerships Development Team
… high-throughput sequencing and other resources at the JGI for projects of relevance to Department of Energy missions. … … SPPs enable research funded by an Industry partner to perform a defined scope of work using the JGI’s unique … sponsored by the Berkeley Lab and one or more partners for shared benefit. Industry partners can retain rights to …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered … establishing a professional presence through getting credit for any scientific contribution they make, whether as part … to get credit for their scientific contributions through data citations, authorship, and presenter opportunities. …
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Understanding Wildfire Recovery, Starting in Soil
The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, … — mainly actinobacteria, as well as proteobacteria, bacteroidata, and patescibacteria. A major strength of this kind of … builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful snapshot of what soils …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. … at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria … identified. The JGI researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst …
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A genetic linkage map for the ectomycorrhizal fungus Laccaria bicolor and its alignment to the whole‐genome sequence assemblies
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The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates
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Draft Genome Sequences of Five New Strains of Methylophilaceae Isolated from Lake Washington Sediment
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Genome Sequence of Verrucomicrobium sp. Strain GAS474, a Novel Bacterium Isolated from Soil
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The Expanded Diversity of Methylophilaceae from Lake Washington through Cultivation and Genomic Sequencing of Novel Ecotypes
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