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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… which archives and makes available for research over 100,000 samples and specimens of over 60 different types of … learn more about BioSANS. Letters of Intent are due March 17, 2021 for the FICUS proposal call. Q&A from the Webinar: … staying up to date via our website, social media, and newsletter. Q:  How would people find out about the NEON …
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Building Sphagnum Genomic Resources
… U.S. Department of Energy under Contract No. DE-AC02-05CH11231. For the sphagnome project, germplasm establishment and …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… system to study virus-host interactions. Approximately 150 archaeal viruses had been previously identified. The JGI … , information the Probst lab used to search for and find 13 additional predicted viral  genomes . The team dubbed … do so, they compared samples collected from an aquifer in 2012 and 2018 against a biofilm sample collected in 2018. They …
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10 From JGI on the 2019 Highly Cited Researchers List
… IP & Science arm of Thomson Reuters, has released their 2019 list of Highly Cited Researchers , which includes 10 affiliated with the JGI . The 2019 list focused on Highly Cited Papers, defined in the …
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Mindfully Moving JGI
… to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years after the JGI united the … after countless generations of sequencing platforms (up to 120 sequencing machines at maximum) maintained by a …
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Supercharging SIP in the Fungal Hyphosphere
… fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … how plant materials can be broken down for things like biomass and  biofuels . However, AMF and the microbial … of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… traits that are desirable from a biofuels production perspective. By using genomic database alignment tools, … tissues of C. citriodora . From these samples, a total of 127 TPS loci were found, many of which had high sequence … to TPS genes from other plants. Researchers reported 102 total putative functional TPS genes in C. citriodora, …
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Igor Grigoriev
… over 2500 fungal genomes in the JGI MycoCosm portal. In 2018, he launched scale-up of algal geomics and PhycoCosm … by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson et al (2022) Wildfire-dependent changes in soil … et al. Comparative genomic analysis of the thermophilic biomass-degrading fungi  Myceliophthora thermophila and  …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… reference fungal genome sequences assembled as part of its 1000 Fungal Genomes Project . To map microbial activity, … fungal enzymes actually outnumbered bacterial enzymes 3-to-1. Additionally, the fungal enzymes the team found suggest … bacteria show up. The data underscore what was already suspected: these microbial groups play different roles in a …
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Triggering Morel Fruiting
… from an external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic … fruiting bodies of morel in walk-in growth chambers in 1980s. Unfortunately, he died suddenly, and his patent has … potential assistance from co-habitant microorganisms were unmasked. Plant polysaccharides such as starch and cellulose …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… candidate bioenergy crop for its potential production of biomass on marginal lands not usable for conventional food … the crop and its microbiome. For three consecutive years (2016-2018), researchers conducted large-scale experiments in … Some different responses relate to functioning of the photosynthetic machinery, which requires water to function. …
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