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New Research Sheds Light on Diversity in the Deep Sea
… crust that emit hot, mineral-rich water. These vents are too deep in the sea to get any sunlight, and yet they still … and other microorganisms that live there.  Researchers from Portland State University and the University of … represented in hydrothermal vent communities, with possible applications in biogeochemical engineering,  biofuel …
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JGI Advisory Committees Code of Conduct
… of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core … legacy of team science—bringing science solutions to the world—and to effectively fulfill the JGI’s mission, we … the trust of our stakeholders. These stakeholders range from scientists to members of the public whose tax dollars …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made … But SAR324 can be found throughout the water column, from the warm, well-lit surface, to the blue-lit twilight … attached to.   … This research was supported by grants from the Simons Foundation (#329108 and #721223 to EFD) and …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… vigilant stewardship as JGI’s Operations Deputy has come to a close as this previously retired Naval Commander retires from Berkeley Lab. For the last 15 years, Ray Turner has … called on in the move to the new building where that was really critical. It takes a really special person to be able …
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Teredinibacter haidensis sp. nov., Teredinibacter purpureus sp. nov. and Teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc Bankia setacea (Bivalvia: Teredinidae) and emended
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BIGMAC : breaking inaccurate genomes and merging assembled contigs for long read metagenomic assembly
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… of viruses in the same drop—the vast majority not harmful to humans could be even larger. Viruses infect bacteria, … and eukaryotes, and they range in particle and genome size from small, to large and even giant. The genomes of giant … datasets generated from sampling sites around the world, including data from several DOE-mission relevant …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The … break down the components of plant cell walls, which range from simple to complex carbohydrates, and then convert them … genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently published …
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JGI Workshop at SIMB NP Meeting
Jan. 7: New Capabilities to Study Secondary Metabolism   Although there are still a large number of secondary metabolites yet to be discovered and their biosynthetic logics to be … genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome …
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Pinning Down a Piece of Photosynthesis
… a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle carbon in … light microscope, and fickle, often hiding their function from even the most determined scientist.  Recent work in  … region —  a domain of unknown function, DUF2470. In the world of proteins, a domain of unknown function is a bit of …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Proposals aim to sequence and annotate genomes from Antarctica to Africa … genus has been identified as the most abundant in the world’s oceans, found in a wide range of morphologies and …
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Integrating Experimentation with Data
… (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) for “Empowering Automated Laboratories: … flash talks, and instructive workshops. Researchers from academia, government, and industry, are invited. Check … peer-reviewed proposal process—enabling researchers worldwide to explore complex biological and environmental …
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