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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal … found inside mitochondria, the energy-producing structures within cells. This is the largest dataset of its kind ever … MycoCosm — a platform widely used across the research community — the work lowers technical barriers for …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… and other traits when migrating back to the ocean. The Science Scientists have discovered flagella in an unexpected … are bacteria that act like tiny natural engineers with special skills to break down pollutants and recycle … they likely cooperate with other microorganisms in their community to do so.  In addition, scientists noted that the …
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Tracking the Origins of Methane-Producing Microbes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … most of them archaea. The Quake lab had previously collaborated with the JGI on a proposal using this approach through the … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through … Agreement (2003), the JGI recognized the need to engage the community to inform necessary changes to JGI data policies. … to balance its  Data Release and Utilization Policies with the DOE mandate to provide data access widely to the …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Genomes that Paved the Way This project stems from a Community Science Program proposal that Martin submitted in …
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Virus Discoveries that Keep Getting Bigger
… quickly accelerated understanding of giant viruses. The Science In the last thirty years, in environments all over … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … , diversity exists in infectious cycles, as well, with viruses relying on different strategies for initiation, …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program (CSP) Applications Webinar … CSP  New Investigator call for proposals.  Tips: Contact us with your questions (jgi[email protected]) Carefully … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … in situ functional activities of specific microbial groups within complex communities.  The Microscale Applications … liquid transfer and microfluidics, to minimize molecular biology reactions, increase throughput, and enable …
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2025 NeLLi Symposium
… position paper, and we are pleased to have Nature Microbiology editor Kyle Frischkorn joining us to contribute to … Dekas, Stanford University Kyle Frischkorn, Nature Microbiology Yunha Hwang, Harvard University Elahe Vedadi, Google … Functional Annotation Lead Steven Ahrendt , Biosystems Data Science …
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Virus-Microbe Interactions of Mud Island Mangroves
… his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate Student … laboratories or national user facilities. Baker had worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of … of 100 times the size of what has typically been associated with viruses, while the genomes of large viruses may be only … from several DOE-mission relevant proposals through JGI’s  Community Science Program . Proposals from researchers at …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: … Webinar inviting researchers to submit white papers to the Community Science Program’s  Functional Genomics call for … Zerbe of the University of California, Davis. “The work with JGI was one of the first things we actually started …
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