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Large‐scale maps of variable infection efficiencies in aquatic Bacteroidetes phage‐host model systems
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Old can be new again: HAPPY whole genome sequencing, mapping and assembly
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Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism
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Label-free structural imaging of plant roots and microbes using third-harmonic generation microscopy
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Busting the Unbreakable Lignin
… Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the … reference fungal  genome . The study’s pivotal NMR (nuclear magnetic resonance) data, gathered using magnetic fields to …
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Trent Northen
… the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using … Northen is the Metabolomics Science Program Head at the JGI. Click to learn more about the program's areas of focus, …
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MGM Workshop at Fisabio Summer School 2026
… will be devoted to training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by …
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The Busy World of Deep Sea Eruptions
… underwater volcanoes and hydrothermal vents — where lively microbial communities thrive, and even support entire …
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Evolution of a Fungal Gene Expression Regulator
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like … Robert Schmitz at the University of Georgia and including JGI researchers conducted the largest analysis to date of … mechanisms of genome-wide regulation and cataloging them in JGI’s fungal portal MycoCosm. …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… produced by living organisms. The collaboration between the JGI and the Foundry on this project highlights an  ongoing … organism an osteoyeast. Foundry researchers then performed imaging analyses, using several microscopy techniques to … million annually.  The team is working on developing new microbial strains that can synthesize other bio-based …
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A near complete snapshot of the Zea mays seedling transcriptome revealed from ultra-deep sequencing
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Contrasting Life Strategies of Viruses that Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging
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