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Four Researchers Join JGI User Executive Committee
… have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user facility located at Lawrence Berkeley … biodiversity, ecology, and evolution, with a focus on microbiome sciences and fungal symbioses. He has worked …
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The Case for Conservation
… genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single … comes from finally having an answer to the question, “Why bother keeping this?” For Stuart McDaniel’s lab at the … Pangea. McDaniel’s lab continues to work on the enigma of why the ancient moss sex chromosomes continue to evolve so …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become … Questions about the transition from Phytozome v12 to v13. Why is it necessary to retire Phytozome v12? The codebase …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … at the University of Georgia and including JGI researchers conducted the largest analysis to date of 5mC, an important … The work conducted by the US Department of Energy Joint Genome …
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Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus
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Common Ancestry and Novel Genetic Traits of Francisella novicida-Like Isolates from North America and Australia as Revealed by Comparative Genomic Analyses
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Comparative genomics reveals insights into characterization and distribution of quorum sensing-related genes in Shewanella algae from marine environment and clinical sources
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Comparative Analyses of Four Reference Genomes Reveal Exceptional Diversity and Weak Linked Selection in the Yellow Monkeyflower (Mimulus guttatus) Complex
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VEGA Symposium
… campus. Organized every two years since 2018, the goal of this symposium is to bring together a “Viral Ecogenomics” … uncultivated viral diversity, understand the role of viruses in natural ecosystems, and functionally explore … be held on Nov. 18 in the Tilden room and open-air patio of the same building.  The symposium will include a mix of …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee … , was  recently published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since early …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … Viral Genomics Group Lead at the JGI.  To understand the microbiome systems underpinning a broad range of …
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A Collaboration to Improve Plant Genome Annotations Across Species
… This resource also helps in performing cross-species comparative transcriptomics. *The HudsonAlpha Genome … Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant … types, and analytical protocols that permit gene expression analysis across plants and add additional experimentally …
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