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Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of approved proposals highlight biodiversity and how ecosystems are adapting to stresses. A total of 17 proposals … tree species that are widely grown as feedstocks for lignocellulosic and other biorefinery products. The work builds …

… presentation skills, and participate in professional development enrichment activities. For some students in the … Internship … Cross Species Integration of Single Cell Transcriptomes … Exploring and Visualizing P. hallii … of Genomic Variations … Comparative and Functional Genomic Analysis of Genus Roseovarius … Implementing a Scalable …

… effort to improve the emerging bioenergy crop switchgrass ( Panicum virgatum ), which has established 10 … a combination of really cutting-edge genomics and genetic analysis with large scale data collection,” he added. Jeremy … across the chromosomes. “In the past, we needed model systems to test genetic hypotheses in species with large and …

… proteins. PhycoCosm’s built-in connection to the DOE Systems Biology Knowledgebase (KBase) also allows … microbial and metagenome datasets, MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing …

… are everywhere — in soil, the sea and, of course, the cells of other organisms. As they infect microbes like … Group Lead at the JGI.  To understand the microbiome systems underpinning a broad range of environmental … invisible to the sampling experiments probing Earth’s ecosystems. Viruses rarely grow well in environmental samples …

… sure our computational workload can leverage future HPC systems – our data and compute challenges aren’t getting any … be sent out. The main benefit is professional growth and development for the developers, and the code owners will be …

… data gathered from whole samples rather than single cells or isolated strains, is easy to generate, but … Genome R&D Group and is one of more than 100 scientists and systems engineers involved in computational work at the JGI. … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …

… high throughput approach for isolating individual bacterial cells and amplifying their genetic material, thus bypassing … 673–688 Vyshenska et al. 2023. A standardized quantitative analysis strategy for stable isotope probing metagenomics. mSystems 8:e01280-22. Volland et al. 2022.   A …

Analysis reveals the microbial community involved in a … chemical compound ethene. Applying genome sequencing and analysis, the researchers identified other bacteria and … that can help bioremediate toxic substances has led to the development of cost-effective environmental cleanup …