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… proteins. PhycoCosm’s built-in connection to the DOE Systems Biology Knowledgebase (KBase) also allows … microbial and metagenome datasets, MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing …

… high throughput approach for isolating individual bacterial cells and amplifying their genetic material, thus bypassing … 673–688 Vyshenska et al. 2023. A standardized quantitative analysis strategy for stable isotope probing metagenomics. mSystems 8:e01280-22. Volland et al. 2022.   A …

… sure our computational workload can leverage future HPC systems – our data and compute challenges aren’t getting any … be sent out. The main benefit is professional growth and development for the developers, and the code owners will be …

Analysis reveals the microbial community involved in a … chemical compound ethene. Applying genome sequencing and analysis, the researchers identified other bacteria and … that can help bioremediate toxic substances has led to the development of cost-effective environmental cleanup …

… data gathered from whole samples rather than single cells or isolated strains, is easy to generate, but … Genome R&D Group and is one of more than 100 scientists and systems engineers involved in computational work at the JGI. … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …

A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of … Berkeley National Laboratory (Berkeley Lab). Using a single-cell screen, they can now identify microbes with specific … LBNL Microbes to Biomes Laboratory Directed Research and Development program (LDRD) entitled ‘Tackling …

… to the Human Genome Project and led annotation and analysis of diverse eukaryotic genomes, from protists to … development reveals conserved genes behind complex multicellularity in fungi. Proc Natl Acad Sci U S A. … 2011; 29: 922-927. Eastwood DC et al. The plant cell wall-decomposing machinery underlies the functional …

… entities that seek to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are … plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature … The Impact In order to gain more insights into Earth’s ecosystems, researchers must examine the interactions that …