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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, … years where he was a driving force behind the development of numerous genomic resources that fostered the widespread adoption of Brachypodium distachyon as an experimental model for the …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s … methanogens were, but they were discovered by genome sequencing, which is a much less biased approach to studying … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … quality genome assemblies for all three grasses. With these datasets, researchers made a pan-genome containing four  B. …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a … done the synthesis, metagenome mining, all the way from sequencing to functional characterization, and a project … (BER) missions. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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iPHoP: A Matchmaker for Phages and their Hosts
… are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… Ancient  Chloroflexota s ditched their flagella and other … to spring. These biodiversity hotspots harbor specialized microbial communities living in extreme conditions. The … organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. Department of Energy Joint …
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JGI announces 2024 Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art … accepted for 2024. Proposals are accepted year-round; the next deadline is Jan. 30, 2025. …
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DRAM for distilling microbial metabolism to automate the curation of microbiome function
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Microbial Ecology on Solar Panels in Berkeley, CA, United States
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Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics
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Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
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The genomic standards consortium: bringing standards to life for microbial ecology
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