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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes from complex environmental … deployed a pipeline to first target cells from communities of uncultivated microbes, and then efficiently retrieve and … be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …
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Jeremy Schmutz
… human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … assembly, and improvement strategies for de novo sequencing of eukaryotic organisms from simple yeasts to large … the JGI Plant Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But … interactions? Do generalist viruses run rampant, capable of infecting different host species? Or, do they tend to … cycling of carbon, nitrogen, and other elements, better understanding the predator-prey dynamics in these mats helps …
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JGI@25: Stories from Intern Alumni
… . Over the next few months, we’ll be revisiting a number of notable achievements that showcase our collaborations and … the past 25 years, the JGI has hosted interns from a number of universities and organizations. From field research and wet lab experiments, to computational …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant representatives of deep subsurface ecosystems. A team of researchers … to visualize the behavior of a particular candidate virus under a microscope. The viruses were adsorbed by the cells, …
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JGI announces 2024 New Investigator portfolio
… is eager to work and share our tools with a widening circle of researchers. That’s why each year we look for novel … proposals — through the New Investigator call under our Community Science Program . Below find a list of researchers whose proposals were accepted for 2024. …
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The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … Honey bees are invaluable pollinators — cupids of the plant world facilitating the remixing of genes in the … bacterial clades shared between honey bee and bumblebee gut microbiomes. Researchers found that pollen’s pectin and …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … piece of how they regulate their genomes, but is not well understood in fungi. A team of researchers reported on the … User Facility, and others like it, are uncovering the true diversity of the fungal kingdom. The abundance of fungal …
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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