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The More the Merrier: Making the Case for Plant Pan-genomes
Brachypodium model system traces polyploid genome evolution. Flowering … Berkeley National Laboratory (Berkeley Lab), relied on a model grass system for answers. Their work  recently …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
…   These experiments focused on two species at once: the model legume species  Medicago truncatula and the … said.  This work focused on a relatively well-understood model system, so future directions will also include …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Matthew Kellom
Matt is broadly interested in the interactions between microbial life and environment, and using metagenomics to study these complex natural systems. Microbial communities living in hard-to-reach places that …
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Katherine Louie
Rocha UN, Shi S, et al. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nat Microbiol. 2018;3: …
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JGI@25: Solving the Mystery of the Missing Oil
… also helped track and characterize the shifting waves of microbial communities involved in removing different … at exactly what happens at all levels and developing models for cellular properties, communities and ecosystems.” … with the JGI successfully simulated how successive waves of microbial populations degraded the dispersed oil.   Terry …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… together on predicting the level of photosynthesis in a model green alga called Chlamydomonas reinhardtii. We’re using an attentive deep learning model called Tabnet in order to perform regression on the …
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Fishing for Novel Cellulose Degraders
… characteristics. When they tested the screen method on a microbial community from geothermal hot springs, they … microbes. The new technique is another tool for microbial ecologists to learn more about the diversity of … The team first tested the approach on bacterial laboratory models to set a reference for its performance, and then …
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Igor Grigoriev
National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of California, Berkeley. He …
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MGM Workshop at Fisabio Summer School
June 24-28: Module 2/Microbial Genomics & Metagenomics Workshop The workshop is …
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JGI@25: Strengthening Soybean
… his colleagues had identified 1,110 genes involved in lipid metabolism.  “There’s still a lot of thinking that truck …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… that those zinc-binding proteins are important for primary metabolism such as photosynthesis and gene regulation.  Mock …
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