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Plastome evolution in annual Brachypodium species reveals widespread heteroplasmy and chloroplast capture, lineage-specific codon usage bias, and low positive selection
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Annual Genomics of Energy & Environment Meeting
… Thank you for joining us at the 2024 DOE Joint Genome … gathering of leaders from diverse disciplines to highlight how they are addressing the world’s most pressing energy and environmental challenges.  The invited talks emphasize how the research infrastructure – DNA sequencing, synthesis, …
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which microbes are handling specific nutrients, or what they're doing with those nutrients, and even how quickly. But there's a catch: SIP labwork and analysis …
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2025 NeLLi Symposium
…   Registration has closed   Registration fees: Regular attendees  … previous NeLLi Symposia. In this 2025 Symposium, we will showcase the latest research on the evolution of cellular … symbioses. We aim to foster discussions centered on how to capture, define, quantify, and functionally …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea vents hold … ecosystems. This means they hold clues for understanding how life thrives in extreme environments. They also produce … 40 samples from five oceanic regions to better understand how these hydrothermal ecosystems function in such extreme …
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Viruses Reprogram Cells into Different Virocells
… Microbial cells infected by viruses undergo metabolic … State University and the University of Michigan studying how virus infections cause significant metabolic changes in … microbial cells that are transformed into virocells, and how the outcomes of these infections can affect the …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of … that time. “Looking across the tree of life, it’s striking how many uncultivated lineages are only represented by … field [metabolic modeling], but they might be interested in how biochemistry impacts what they work on. The genomics …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, … He is particularly interested in understanding how, when and why microbes decide to produce which … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo PhD, …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing … down polysaccharides. But scientists have wondered exactly how the microbial community carries out its helpful … bacterial clades can metabolize hemicellulose and pectin. However, the two specialize to an extent.  Gilliamella  …
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JGI@25: Stories from Intern Alumni
… 2022 marks the JGI’s 25th anniversary . Over the next few months, … we’ll be revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great … Ho, Maria Mendoza, Erone Cao and Sabah Ul-Hasan share how these experiences have influenced their career journeys. …
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JGI-USCCN Strain Sequencing Opportunity
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since … we caught up with JGI staff, collaborators and users to see how software and supercomputing capabilities have evolved to … for over 20 years in order to better understand how the freshwater ecosystem works. When she set out to …
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