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Party in the Rhizosphere
… There’s a party in the soil, and microbes are the VIPs. They’re feasting on the …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? … work complements efforts to further develop sustainable alternative approaches for manufacturing bioproducts and … are partnering with Yasuo Yoshikuni and Ian Blaby of the DNA Synthesis Science Program . “This collaboration brings …
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Enlarging Windows into Understanding Gene Functions
… factors that control how genes are turned on is known as DNA affinity purification sequencing or DAP-seq. The … The technology expresses the transcription factor proteins from a DNA template amplified directly from either genomic … binding, we build a lot on DAP results. We also employ RNA-Seq and diverse in silico approaches for reconstructing …
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Defining a Pan-Genome for Antarctic Archaea
… in learning how these microbes have learned to adapt from marine to hypersaline conditions by studying the microbial communities in Antarctic lakes, some of which have … Rick Cavicchioli compared two strains of haloarchaea from different Antarctic lakes. To assess the genomic …
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The Mobilome in the Mire
…   For years, researchers have known that many datasets miss a key part of microbial genomes: the mobile … (JGI) as they talk about their recent work on a time series from Sweden’s Stordalen Mire. …
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A Model System for Perennial Grasses
… (Hall’s panicgrass), by generating two complete genomes from varieties that diverged over a million years ago. The … has deep roots that allow it to access nutrients easily from a variety of soils and has a high tolerance of extreme water conditions … Datasets …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? … and viability constraints. Cell extracts provide an alternative format for chemical synthesis in the absence of cell … are partnering with  Yasuo Yoshikuni and  Ian Blaby of the  DNA Synthesis Science Program . “This collaboration brings …
Learn more
An Enzyme System to Help Catalyze Bioproduction of Plastic
… — nitrogenases — other enzymatic machinery harvests sulfur from gaseous organic sulfur compounds in the atmosphere.  … Genomes to Structure and Function focus area of the JGI’s DNA Synthesis Science Program help advance DOE interests in … enzymes,” said Yasuo Yoshikuni, head of the JGI’s DNA Synthesis program and a co-author on the paper. First a …
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Nandita Nath
… in developing new methods to improve genome recovery from single cells and to build sequencing libraries from minimal DNA input without amplification. …
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The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
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The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible
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Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing
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