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Picking Up Threads of Cotton Genomics
… the cotton fields look like popcorn is literally growing on plants, with fluffy white bolls bursting out of the green … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … authors of the  paper published April 20, 2020 in  Nature Genetics include Jane Grimwood and Jeremy Schmutz of JGI’s  …
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Nikos Kyrpides
… with an emphasis on Microbiome Data Science. His group is developing novel methods for enabling large-scale … Camargo AP. et al. (2023) Identification of mobile genetic elements with geNomad. Nat Biotechnol . Epub. Neri … of Human Microbiomes Reveal Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | …
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Computationally Classifying Fungal Lifestyles
… were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, … nutrients from decaying organic matter (saprobes), and many plant pathogens known to infect most major food crops and … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… Rumen microbes have the ability to break down hardy plant cell walls and therefore hold clues to how humans … scale to produce biofuels . Since one of the challenges of developing alternative fuels from plants is the high cost … environmental samples — to identify over 27,000 microbial genes. These genes were identified based on their potential …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental … of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley … Terpenes are made via a tangled network of enzymes in plants. To better pinpoint the biosynthetic routes that …
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A sorghum genome-wide association study (GWAS) identifies a WRKY transcription factor as a candidate gene underlying sugarcane aphid (Melanaphis sacchari) resistance
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Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Evolution of a multi‐step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer‐binding protein triggers acid‐activated gene expression
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A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β‑Linked GlcNAc Polysaccharides
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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An Addiction Crucial to a Fungus’ Reproduction
… organisms (symbionts) are transmitted between host generations, researchers investigated the role that bacteria … endobacteria, the Rhizopus fungus cannot act as a plant pathogen, it cannot reproduce asexually, and … and scientists at the Joint Genome Institute, a DOE Office of Science User Facility was conducted to understand how …
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