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Benjamin Cole
… their growth program, and on how plants coordinate their gene expression with light and temperature oscillations … how microbes can colonize plant roots, focusing on genetic components required for effective colonization. In …
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Bacterial response to the 2021 Orange County, California, oil spill was episodic but subtle relative to natural fluctuations.
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Tracing the Evolution of Shiitake Mushrooms
… enzymes these fungi use to break down wood, and compares genetic diversity between cultivated and wild shiitake … raphanica and L boryana in the Americas. Tracing these phylogenetic relationships suggests that the shiitake … sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome …
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Medium-Chain Fatty Acid Synthesis by “Candidatus Weimeria bifida” gen. nov., sp. nov., and “Candidatus Pseudoramibacter fermentans” sp. nov.
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Mapping the Earth’s Hidden Fungal Kingdom
… massive comparative genomics to decode millions of mystery genes and lay a future-ready foundation     Over the past … have been named. Among those sequenced, roughly half of all genes have completely unknown functions — like a vast … new capabilities through partnerships with bacterial symbionts, and how others revolutionized their biology by …
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Team Science Reveals Important Protein in Poplar
… molecules that combat infections. When the  PtrbHLH011 gene was knocked out in poplar, those plants produced double … of immunity-boosting flavonoids. Conversely, when the gene was overexpressed, those plants had stunted growth, … Institute (JBEI.) The JGI team measured the levels of gene expression in the engineered plants while a Molecular …
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Antiquaquibacter oligotrophicus gen. nov., sp. nov., a novel oligotrophic bacterium from groundwater
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A Plantiful Future: Xiaohan Yang
… Laboratory, believes they can. And, what’s more, that using gene editing technology to conscientiously mix traits of …
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Finding the Fermenters
… at the University of California, Davis and UC Santa Barbara generated a list of prokaryotes with fermentative metabolism … IMG data portals to get information about the genomes and genes of the organisms on the list. They also searched IMG/M for all protein-coding genes belonging to each genome. The final dataset – …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… understanding which microbes are present in a sample, to generate data about which organisms are active, and which … example, SIP experiments can show how soil microbes cycle nitrogen and carbon, or how freshwater ecosystems process … process to carry out the onerous SIP sample processing. Generating these datasets opens up the possibility of new …
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Dan Rokhsar
… the Physics Department and in 2002 he became a Professor of Genetics, Genomics and Development after his research … by combining computational genome analysis, sequence-based genetic methods, and comparative developmental biology. In …
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John Vogel
… pipeline and, in collaboration with industrial partners, generated hundreds of transgenic switchgrass lines in an … sequenced mutant collections, transformation technology, epigenetic analysis techniques) and utilizing these resources … compact genome, diploid nature, self compatibility, rapid generation time and simple growth requirements. Links to …
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