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Promoting the Power of Viral Metagenomics
… summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen Nayfach and  Nikos … published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of … as input. Data analysis Q:  What types of analysis support does JGI provide for DNA modification detection? A:  DNA …
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Digging into Microbial Ecosystems Deep Underground
… deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re … The video complements a recently published paper with first author Amundson in the journal Microbiome . The … work builds off a proposal approved through a collaborative science initiative called Facilities Integrating …
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JGI-UC Merced Interns Share Their 2021 Experiences
… interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate in professional … Implementing a Scalable JGI-RQC Pipeline on the Cloud …
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Outreach Stories
… Interested in reading more JGI intern and mentor success stories? Read more below. …
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T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… published in  The Proceedings of the National Academy of Sciences bridges this gap, by tracing the evolution of a … National Laboratory (Berkeley Lab). He completed this work with collaborators at the University of Wisconsin-Madison as … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Micro-Scale Applications Group
… genomes and directly link functional information with individual cells. Research Team    … The JGI uniquely offers the first quantitative Stable Isotope … The JGI provides users access to cutting-edge cell sorting, DNA … and sequence microbial aggregates after first imaging with various microscopy techniques …
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All Events
… The JGI is represented at conferences year round; find out where …
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Year in Review: JGI’s 2018 Progress Report Available Now
… The latest edition of the JGI Progress Report highlights notable research and … lake east of California’s Yosemite National Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were sequenced by the JGI (isolates here , here and here ), and the data has been …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome … and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled capabilities for science.  Dr. … simulation and coarse-graining of biological complexity with NFsim. Nature Methods 8, 177–183 (2011).  …
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The widespread IS200/605 transposon family encodes diverse programmable RNA-guided endonucleases
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