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Uncovering Sequence and Structural Characteristics of Fungal Expansin‐Related Proteins With Potential to Drive Substrate Targeting
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Draft genome sequence of Clostridium tetanomorphum DSM 4474T isolated from a septic wound
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Nigel Mouncey
… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its 27-year history. He … to learn more about the program's areas of focus, major initiatives and more.  … and managerial guidance for all aspects of the JGI. This includes responsibilities toward the JGI internal scientific …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have … Center, JGI staff worked around the clock to generate the sequences of these three chromosomes. In 2004, they published the sequences of these three chromosomes. These sequences …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI … recent Nature Communications paper, uncovering giant virus sequences in soil for the first time. A second approach … genomes directly from the environment and focuses on sequence reads to link mobile elements such as plasmids to …
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop … workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based platform that provides access to the wealth of public microbiome sequence data and enables the user to analyze these data …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a resource for breeders and … high-quality reference genomes. By cataloguing a genome sequence for a line of sorghum, reference genomes have …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have … but other important crops as well. In 2009, the JGI sequenced and analyzed the first reference genome for … genome. Sorghum was the second cereal crop with a fully sequenced genome (following rice in 2002) and the first C4 …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Yeast strains … to produce the small molecules glycerol and itaconic acid to see how the cell-free system allowed them to … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Webinar: SIP technologies at EMSL and JGI
… Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that … carbon and nutrient flux, and identify microbes assimilating labeled compounds. During this webinar, EMSL’s Mary … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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A One-Stop Shop for Analyzing Algal Genomes
… The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The Science … algal genomes can be incredibly complex and difficult to sequence and understand. A team of researchers led by Algal … (Berkeley Lab), have unveiled PhycoCosm in the Nucleic Acids Research journal. The genome portal reinforces the …
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