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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … to understand, generate and manipulate the human language—are well positioned to help enhance our understanding of … ecological Harvard Forest project, large datasets from soil microbiome studies collected across various terrains, …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea … flourish in hypersaline environments, and researchers are interested in learning how these microbes have learned … of the strain variation appeared related to defense against viruses. Experiments infecting H. lacusprofundi with an …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing … belongs to Korarchaeota Drs. Luke McKay and William Inskeep are co-authors on the Borrel et al. study described above, …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… With a new methodology, scientists are now getting more complete genomic results from single cells. The … together, they found most bacterial genomes from water and soil communities were at least 80% complete when studied … New Innovator Award (7DP2CA239145), and Burroughs Wellcome Career Award for Medical Scientists. …
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Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass
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How to Target a Microbial Needle within a Community Haystack
… A workflow for capturing the genetic make-up of specific uncultivated microbes … a specific group of marine bacteria called “Vis6” that are found in North Sea algal blooms. The workflow starts by … view of a population’s genetic makeup and identifying viruses interacting with these populations. Development of …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even … called phytoplankton play an outsize role in cycling carbon and nutrients. These microscopic algae have managed … concentrations of the essential trace metal zinc, compared to other oceans. That zinc turns out to be extremely …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base … methylation of the base cytosine at the 5th position on its carbon ring, or 5mC. In many organisms, 5mC is an important … pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may help the pathogens evade …
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Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1T, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their derivatives during her Ph.D. in Microbiology at the Eberhard Karls … with specific questions regarding their proposed research are encouraged to schedule time with Tanja Woyke . Click to …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University … Characterization of p-hydroxycinnamate catabolism in a soil Actinobacterium. J. Bacteriol. 196, 4293-4303. Otani, …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This … what they’ll take with them as they go forward in their careers.   Listed below are the interns, their mentors, and … system for the selection of genes essential for specialized carbon utilization ” Jesica Calderon : “Being a JGI intern …
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