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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and … the perennial grass Miscanthus sinensis has been published. Analysis of the genome sequence also provides insights into how the multiple chromosomes of Miscanthus arose by ancient … Innovation, which is supported by the U.S. Department of Energy, Office of Science, Office of Biological and …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers … a candidate bioenergy feedstock with a complex genome with multiple copies of its chromosomes. Switchgrass has deep … team conducted several large-scale field experiments and analysis to find relationships between sequence variation …
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iPHoP: A Matchmaker for Phages and their Hosts
… With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … freely available online ). It combines and evaluates multiple predictions to reliably match viruses with their … host prediction tool that draws on the strengths of multiple virus-host prediction methods. In building this …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … chromosomal hoarding had been thought to be the result of multiple whole-genome duplications. The process of … to its gene hoarding and those long genes. And gene family analysis showed that genes directing development of …
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Corals in Hot Water Get Help From Their Microbes
… change, corals are in mortal peril. But corals comprise multiple organisms: a coral host, a photosynthetic …
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Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA.
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2024 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic … A record number of primary users — 2,475 — had active proposals with us, … processed 13,700 metabolomics samples With our users, 247 publications were published   …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… from the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing … Choice Awards . NERSC, JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire Editors … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Natural Prodcast Episode 4: Nancy Keller
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Welcome back to Natural … Then you have to maybe improve some of your bioinformatic analysis. You don’t want to get clusters that are encoding …
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Viruses Reprogram Cells into Different Virocells
… from The Ohio State University and the University of Michigan studying how virus infections cause significant … power of genomics and molecular characterization offered at multiple user facilities stewarded by the DOE’s Office of … was done by the JGI, and proteomics and metabolomics analysis and microscopy at EMSL. The team infected the …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … The Prize also recognizes innovative and impactful analysis of microbiome data that has changed our … combination of experimental approaches and large-scale data analysis to better characterize how viruses infect soil …
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