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Metagenome-assembled genomes from microbial communities producing lactic acid from dairy residues
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The relationship between gene traits and transcription in soil microbial communities varies by environmental stimulus
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Methane-fed microbial communities enriched from field-grown rice support diverse heterotrophic bacteria
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What Happens Underground Influences Global Nutrient Cycles
… for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … mutant library leads to photosynthetic defects, offering insights into how algal ponds can regulate photosynthesis under … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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iPHoP: A Matchmaker for Phages and their Hosts
… With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of … use a variety of approaches to match a virus with a potential host. This can result in different predictions. … iPHoP program brings several of these approaches together into the same workflow, then uses a machine-learning model …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … to living on a changing planet. Mo Kaze is a University of California (UC), Merced graduate student working with  … Tringe , JGI’s User Programs deputy and head of the Microbial Systems group through the  DOE Office of Science …
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Kjiersten Fagnan
… methods for reacting subsurface flows, and evolved into scalable methods for scientific data analysis. In 2014 … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s …
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Hiroshi Otani
… technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo PhD, Biotechnology, University of Tokyo … Udwary DW, Mouncey NJ. Comparative and pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 Nov 7;12(1):18909. …
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Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution
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Microbial life under ice: Metagenome diversity and in situ activity of Verrucomicrobia in seasonally ice‐covered Lakes
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Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions
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Sediment microbial communities in Great Boiling Spring are controlled by temperature and distinct from water communities
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