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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one “petabase” – a quadrillion nucleotide bases of DNA sequence to the public data repositories over its now 20-plus-year history. In …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. … on cone snails, C. californicus in particular, as a model system for venom-microbe interactions. Cone snail venom has … today. I didn’t know anything about Principal Component Analysis (PCAs) when I first started, and overall found …
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Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and … because they influence geochemical cycling in forest ecosystems. By deciphering the fruiting-related decomposition … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and other … a very high quality reference S. viridis genome sequence. Analysis of these plant genome sequences also led … be specific to species or groups of species.  The genome data also revealed that green millet was introduced into the …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our … switchgrass genome sequence is available on the JGI plant data portal Phytozome. The combination of field data and … P. virgatum on Phytozome …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny … but then moves out of the cell structure into a cell-free system. The work complements efforts to further develop … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Charting Progress toward Professional Goals
… Select interns look back on meaningful lessons from their summer experiences at the JGI … invaluable scientific and technical experiences.  Genomic data scientist Deanna Beatty sat down with interns hosted at … this. Although my interest was always laid in sort of, in analysis. So sort of more computational generally. But yeah, …
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Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades
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Metatranscriptomic array analysis of ‘Candidatus Accumulibacter phosphatis’‐enriched enhanced biological phosphorus removal sludge
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Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals Conserved Patterns of Adaptive Evolution
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