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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome … Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast …
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JGI Scientists Pen Genome Watch Articles
Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — … and metagenome , rather than just by 16S ribosomal RNA gene censuses.  Emiley Eloe-Fadrosh ,  Metagenome Program … Igor Grigoriev took readers on a quick romp through the  evolution and domestication of yeast , a model eukaryote. …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome Institute hosted … Interns Andrew Lin and mentor Vy Duong, Understanding Key Genes in Photosynthesis Ravikiran Madichetty and mentors TBK … Lavenstein Bendall and mentor Juan C. Villada, Ecology & Evolution of Self-Catalytic Introns across Earth’s …
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Daniel Udwary
… for JGI’s Secondary Metabolites group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene clusters in bacteria and fungi. Prior to joining the … (1996) … List available on Google Scholar … Education … Publications …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in … Resources (ANR), US Department of Agriculture P­­lant Gene Expression Center, Pacific Northwest National …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 … and the proposal focuses on investigating the repeated evolution of three traits relevant to DOE interests: … and then use computational tools to analyze biosynthetic gene clusters and then develop them for a range of …
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal … to white rot fungi. Additionally, some of the saprotrophic genes found in the mycorrhizal species, such as nutrient … … INRAE release  Large-scale genomics sheds light on the evolutionary history of mutualistic forest-dwelling fungi … …
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Nigel Mouncey
Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth … Dr. Mouncey has a long-standing interest in microbial genetics that started with his education and carried forward … World Bio Markets Bio-based Business Person of the Year Publications Committee Chair (2016- ), Society for …
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Benjamin Cole
Dr. Cole is interested in studying how plants interact with their … their growth program, and on how plants coordinate their gene expression with light and temperature oscillations … of Cell Identity as an R package … Education … Selected Publications … Software …
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Jeremy Schmutz
MdS Hossain, J. T., Lovell, J. T.., et al. 2023. JGI plant gene atlas: an updateable transcriptome resource to improve … Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature 492: 423-427. … Award … Plant Science Program … Education … Selected Publications … Awards and Honors …
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Tanja Woyke Elected to American Academy of Microbiology
… of Microbiology (AAM) ! She is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The … developing and harnessing single-cell methods to access the genetic material of uncultivated microbes and link their … from previously understudied clades, establishing their evolutionary relationships and leading to the discovery of …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a method that allows researchers … domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, … can deliver multiple types of payloads, such as individual genes, whole pathways, genome-editing tools, and reporters.” …
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